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Madoka Kyono lives a busy life as the proud, and only, member of the Kamogawa Girls' High School Jersey Club, a school club dedicated to helping those in need. When a mysterious girl named Lan shows interest in joining the Jersey Club, Madoka is at first thrilled at the thought of having a new club member.

Madoka's excitement over her triumphant victory is short-lived when she is told by Pharos officials to be ready for the next battle. Feeling like she's been tricked into becoming a Vox pilot, a furious Madoka plans an escape.

Madoka regains her will to fight thanks to Yoko, but quickly finds herself outnumbered by the enemy Ovid.

A new girl transfers to Madoka's school, introducing herself as Muginami. Recognizing the girl as the one who previously infiltrated Pharos headquarters, Lan decides to keep a close watch on her.

Lan, still suspicious of Muginami's true objective, confronts her for some answers. To Lan's surprise, Muginami has the Memoria for the last remaining Vox, making her its pilot.

Lan tells the Pharos crew of Villagiulio's intent to destroy them as well as the Vox. Pharos stands by ready for the coming attack.

Madoka, Lan, and Muginami spend a peaceful day at the Kamo Girls' High Oraga Festival, enjoying all the events they helped put together. Meanwhile, Villagiulio is readying his forces to launch a full-scale attack on Earth to destroy the Vox and Pharos.

The crew of Pharos receives a surprise visit from Asteria Lizamarie De Roschefall, the acting Chairman of Novumundus. Asteria wants to hear what happened the day Villagiulio attacked and about the Vox Aura's anomaly.

The Jersey Club is busy helping the school prepare for its upcoming Oraga Festival.

Madoka, Lan, and Muginami spend a peaceful day at the Kamo Girls' High Oraga Festival, enjoying all the events they helped put together.

Lan and Muginami scramble to intercept Villagiulio's invading forces, leaving behind Madoka.

The shock of seeing her loved ones become casualties of war causes Madoka and her Vox Aura to lose control, bringing the Flower of Lagrange to rain all over the city of Kamogawa.