The resistance attempts to attack Saurian leader Overlord Lord Dragaunus, but his and their spaceship end up in a wormhole that takes both ships to Earth. The alien ducks decide to live off of hockey, as they look for Dragaunus.
The Ducks' vehicle called The Migrator breaks down near a small town. They go there to ask for help, but they receive a suspiciously warm welcome - robotic, almost.
In this tribute to Back to the Future and Star Wars, future Phil contacts the Ducks and warns them that Dragaunus will conquer Earth and his lieutenant Phineas Viper will rule it. The Ducks must go to the future to change the past.
In this tribute to Dungeons and Dragons tabletop rpg and indie comic book Elfquest, the Ducks find themselves in an alternate reality where magic rules and Prince Borg leads a revolt against a usurper - evil dragon-wizard Asteroth.
Dragaunus kidnaps Wildwing and uses his incredibly advanced high-tech goalie mask to find mythical Atlantis, where Balerium Crystals, the material he needs to go back to his and the Duck's dimension, are supposedly located.
Mighty Ducks' manager Phil tells police captain Klegghorn about the team's origin. Puckworld was a peaceful hockey-loving duck planet. Then one day evil Saurians took over. A group of young brave friends forms a resistance movement.
Dragaunus turns a hockey player with a grudge against the Ducks into a monster and teams him up with a second monster that can manipulate electricity. Grin's background is revealed and zen-like nature tested.