- (book with Bruce M. Metzger) "The Text of the New Testament: Its Transmission, Corruption, and Restoration". Fourth edition. New York: Oxford University Press USA, 2005. ISBN 0195166671
- (book) "The Transformation of Jesus: How a Jewish Prophet Became God". New York: Oxford University Press. ISBN 0195179269
- (book with Gordon D. Fee and Michael W. Holmes) "The Text of the Fourth Gospel in the Writings of Origen". Atlanta, GA: Society of Biblical Literature, 1992. ISBN 1555407889
- (book) "Studies in the Textual Criticism of the New Testament". Boston, MA: Brill Academic Publishers, 2006. ISBN 9004150323
- (book) "Peter, Paul, & Mary Magdalene: The Followers of Jesus in History and Legend". New York: Oxford University Press USA, 2006. ISBN 0195300130
- (book) "The Orthodox Corruption of Scripture: The Effect of Early Christological Controversies on the Text of the New Testament". New York: Oxford University Press USA, 1993. ISBN 0195080785
- (book) "The New Testament and Other Early Christian Writings: A Reader". Second edition. New York: Oxford University Press USA, 2003. ISBN 0195154630
- (book) "The New Testament: A Historical Introduction to the Early Christian Writings". Second edition. New York: Oxford University Press USA, 1999. ISBN 0195126394
- (book) "The Lost Christianities: The Battles for Scripture and the Faiths We Never Knew". New York: Oxford University Press USA, 2003. ISBN 0195141830
- (book) "Lost Scriptures: Books that Did Not Make It Into the New Testament". New Yori: Oxford University Press USA, 2003. ISBN 0195141822
- (book) "Jesus : Apocalyptic Prophet of the New Millennium". New York: Oxford University Press USA, 1999. ISBN 0195124731
- (book with Andrew S. Jacobs) "Christianity in Late Antiquity, 300-450 C.E.: A Reader". New York: Oxford University Press USA, 2003. ISBN 0195154606
- (book) "Didymus the Blind and the Text of the Gospels". Scholars Press, 1987. ISBN 1555400833
- (book) "Apostolic Fathers: Volume II. Epistle of Barnabas. Papias and Quadratus". Cambridge, MA: Harvard University Press, 2003. ISBN 0674996089
- (book) "A Brief Introduction to the New Testament". New York: Oxford University Press USA, 2004. ISBN 0195161238
- (book) "The Apostolic Fathers: Volume I. I Clement. II Clement. Ignatius. Polycarp. Didache". Cambridge, MA: Harvard University Press, 2003. ISBN 0674996070
- (book) "After the New Testament: A Reader in Early Christianity". New York: Oxford University Press USA, 1998. ISBN 0195124839
- (book) "Misquoting Jesus: The Story Behind Who Changed the Bible and Why". HarperSanFrancisco, 2005. ISBN 0060738170
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