When they pronounce the child dead at the beginning of the episode, he is intubated. When the father is shown the dead boy, the endotracheal tube has been removed. This would not happen, as the body would be left with everything inserted for the medical examiner to view at autopsy.
When Fin and Munch were talking to M.E. Warner, Fin walks near a dead body, Jamie, and the body's foot moves right when the camera pans over.