- (1985) Album (w/The Flaming Lips): "The Flaming Lips" (Lovely Sorts of Death Records; later released on Restless Records).
- (1986) Album: "Hear It Is" (Pink Dust Records; later released on Restless Records).
- (1987) Album: "Oh My Gawd!!! The Flaming Lips" (Restless Records).
- (1989) CD: "Telepathic Surgery" (Restless Records).
- (1990) Album: "In a Priest Driven Ambulance" (Restless Records).
- (1992) Album: "Hit to Death in the Future Head" (Warner Bros. Records).
- (1993) Album: "Transmissions from the Satellite Heart" (Warner Bros. Records).
- (1994) Album: "Due to High Expectations, the Flaming Lips are Providing Needles for Your Balloons" (Warner Bros. Records).
- (1995) Album: "Clouds Taste Metallic" (Warner Bros. Records).
- (1997) Album: "Zaireeka" (Warner Bros. Records).
- (1998) Album: "A Collection of Songs Representing an Enthusiasm for Recording... by Amateurs: The Flaming Lips 1984-1990" (Restless Records).
- (1999) Album: "The Soft Bulletin" (Warner Bros. Records).
- (2002) CD (3-disc set): "Finally the Punk Rockers are Taking Acid (1983-1988)" (Restless Records).
- (2002) CD (2-disc set): "The Day They Shot a Hole in the Jesus Egg (1989-1991)" (Restless Records/Rykodisc).
- (2002) CD: "Yoshimi Battles the Pink Robots" (Warner Bros. Records).
- Music video: Directed Amanda Palmer video "Do It with a Rockstar".
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